An Interactive Tool for Animating Biology, and Its Use in Spatial and Temporal Modeling of a Cancerous Tumor and Its Microenvironment.

The ability to visualize the ongoing events of a computational model of biology is critical, both in order to see the dynamics of the biological system in action and to enable interaction with the seat knob model from which one can observe the resulting behavior.To this end, we have built a new interactive animation tool, SimuLife, for visualizing

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Constraint-Based, Score-Based and Hybrid Algorithms to Construct Bayesian Gene Networks in the Bovine Transcriptome

Bayesian gene networks are powerful for modelling causal relationships and incorporating prior knowledge for making inferences about relationships.We used three algorithms to construct Bayesian gene networks around genes expressed in the bovine uterus and compared the efficacies of the algorithms.Dataset GSE33030 from the Gene Expression Omnibus (G

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